Publications < TNTgroup

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---+ 2009
   * A Ammenti, F Cecconi, U Marini-Bettolo-Marconi and A Vulpiani, <br>
     _A statistical model for translocation of structured polypeptide chains through nanopores_ <br>
     [[http://pubs.acs.org/doi/pdfplus/10.1021/jp900947f][J. Phys. Chem. B 113, 10348 (2009)]]  

   * F Piazza, P De-Los-Rios and F Cecconi, <br>
     _Temperature dependence of normal mode reconstructions of protein dynamics_  <br>
     [[http://link.aps.org/doi/10.1103/PhysRevLett.102.218104][P.R.L. 102, 218104 (2009)]]  

   * F Ginelli, M Cencini and A Torcini, <br>
     _Synchronization of spatio-temporal chaos as an absorbing phase transition: a study in 2+1 dimensions_ <br>
     [[http://www.iop.org/EJ/abstract/1742-5468/2009/12/P12018/][JSTAT  P12018 (2009)]]

   * A Baronchelli, T Gong, A Puglisi and V Loreto, <br>
     _Modeling the emergence of universal categorization_ <br>
     [[http://arxiv.org/abs/0908.0775][arXiv:0908.0775 (2009)]]

   * A Puglisi and D Villamaina, <br>
      _Irreversible effects of memory_ <br>
     [[http://arxiv.org/abs/0907.5509][arXiv:0907.5509 (2009)]]


   * S. Pigolotti and M. Cencini,<br>
     _Speciation-rate dependence in species-area relationships_ <br>
     [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WMD-4WFG60P-2&_user=10&_coverDate=09%2F07%2F2009&_rdoc=10&_fmt=high&_orig=browse&_srch=doc-info%28%23toc%236932%232009%23997399998%231387081%23FLA%23display%23Volume%29&_cdi=6932&_sort=d&_docanchor=&_ct=21&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=5d73a3739a9c53ce394cf4dbabc697b9][J. Th. Bio. 260, *83* (2009) .]]

   * G Costantini, A Puglisi and U Marini Bettolo Marconi, <br>
     _Models of granular ratchets_ <br>
     [[http://www.iop.org/EJ/abstract/1742-5468/2009/07/P07004][J. Stat. Mech. (2009) P07004]]

   * D. Villamaina, A. Baldassarri, A. Puglisi and A. Vulpiani, <br>
     _Fluctuation dissipation relation: how to compare correlation functions and responses?_ <br>
     [[http://www.iop.org/EJ/abstract/1742-5468/2009/07/P07024][J. Stat. Mech. (2009) P07024 ]]

   * F. Diotallevi, A. Puglisi, A. Lamura and S. Succi, <br>
     _Capillary filling with randomly coated walls_ <br>
     [[http://dx.doi.org/10.1088/1742-5468/2009/02/L02001][J. Stat. Mech. (2009) L02001]]


---+ 2008

   *  	 D Villamaina, A Puglisi and A Vulpiani, <br>
         _Fluctuation-Dissipation relation in sub-diffusive systems: the case of granular single-file_ <br>
         [[http://www.iop.org/EJ/abstract/1742-5468/2008/10/L10001][J. Stat. Mech. L10001 (2008)]]

   *  	 F. Diotallevi, L. Biferale, S. Chibbaro, A. Puglisi and S. Succi, <br>
         _Front pinning in capillary filling of chemically coated channels_ <br>
         [[http://link.aip.org/link?pre/78/036305][Phys. Rev. E 78 036305 (2008)]]

   * 	T Gong, A Puglisi, V Loreto and W S-Y Wang,<br>
       _Conventionalization of Linguistic Knowledge under Communicative Constraints_ <br>
       Biological Theory 3 2 (2008)

   * A. Gabrielli and F. Cecconi,<br>
     _Clustering and coalescence from multiplicative noise: the Kraichnan ensemble_ <br>
     J. Phys. A: Math. Gen. *41*, 235003 (2008).

   * F. Cecconi, C. Guardiani and R. Livi,<br>
     _Analyzing pathogenic mutations of C5 domain from cardiac Myosin Binding Protein C through MD simulations_ <br>
     Eur. Biophys. J. doi 10.1007/s00249-008-308-x (2008)

   * C. Guardiani, F. Cecconi and R. Livi,<br>
     _Stability and kinetic properties of C5-domain from Myosin Binding Protein C and its mutants_ <br>
      Biophys. J. *94*, 1403 (2008). 
 
   * C. Guardiani, F. Cecconi and R. Livi,<br>
     _Computational analysis of folding and mutation properties of C5 domain from Myosin Binding Protein C_ <br>
      Proteins Struct. Func. Bioinf. *70*, 1313 (2008)

   * G Costantini, U Marini Bettolo Marconi, and A Puglisi<br>
      _Noise rectification and fluctuations of an asymmetric inelastic piston_ <br>
     [[http://www.iop.org/EJ/abstract/0295-5075/82/5/50008/][Europhys. Lett. *82*, 50008 (2008)]]


   *  U. M. Bettolo Marconi, A. Puglisi, L. Rondoni and A. Vulpiani <br>
       _Fluctuation-Dissipation: Response Theory in Statistical Physics_ <br>
       [[http://dx.doi.org/10.1016/j.physrep.2008.02.002][Physics Reports *461*, 111 (2008)]]

   *   A. Puglisi, A. Baronchelli and V. Loreto <br>
       _Cultural route to the emergence of linguistic categories_ <br>
        [[http://www.pnas.org/cgi/content/abstract/105/23/7936][Proc Natl Acad Sci USA *105*, 7936 (2008)]]

   *  A. Puglisi, M. Assaf, I. Fouxon and B. Meerson <br>
      _Attempted density blowup in a freely cooling dilute granular gas: hydrodynamics versus molecular dynamics_ <br>
      [[http://link.aps.org/abstract/PRE/v77/e021305][Phys. Rev. E *77*, 021305 (2008)]]


   *   M. Cencini, C.J. Tessone and A. Torcini<br>
       _Chaotic synchronizations of spatially extended systems as non-equilibrium phase transitions_  <br>
	[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=CHAOEH000018000003037125000001&idtype=cvips&gifs=Yes][Chaos 18, 037125 (2008)]]


   *   J. Bec, M. Cencini,  R. Hillenbrand and K. Turitsyn<br>
       _Stochastic suspensions of heavy particles_  <br>
	[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVK-4RY8SH7-1&_user=10&_coverDate=08%2F15%2F2008&_rdoc=32&_fmt=high&_orig=browse&_srch=doc-info(%23toc%235537%232008%23997629985%23694275%23FLA%23display%23Volume)&_cdi=5537&_sort=d&_docanchor=&_ct=62&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=88518cfbec7a7aa7637abe4990fa5f0d][Physica D *237*  2037-2050 (2008).]]



   * L. Biferale, E. Bodenschatz, M. Cencini, A.S. Lanotte, N.T. Ouellette, F. Toschi, H. Xu<br>
      _Lagrangian structure functions in turbulence: A quantitative comparison between experiment and direct numerical simulation_     <br>       
      [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PHFLE6000020000006065103000001&idtype=cvips&gifs=yes][Phys. Fluids, *20*, 065103 (2008)]]

   *  A. Arnèodo, R. Benzi, J. Berg, L. Biferale, E. Bodenschatz, A. Busse, E. Calzavarini, B. Castaing, M. Cencini et al.<br>
      _Universal Intermittent Properties of Particle Trajectories in Highly Turbulent Flows_ <br>
     [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PRLTAO000100000025254504000001&idtype=cvips&gifs=Yes][Phys. Rev. Lett., *100*, 254504 (2008)]]

   * E. Calzavarini, M. Cencini, D. Lohse  and F. Toschi, <br>
     _Quantifying Turbulence-Induced Segregation of Inertial Particles_ <br>
     [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PRLTAO000101000008084504000001&idtype=cvips&gifs=Yes][Phys. Rev. Lett. *101*, 084504 (2008) ]]
---+ 2007

   *    J. Bec, L. Biferale, M. Cencini, A. Lanotte, S. Musacchio and F. Toschi <br>
        _Heavy particle concentration in turbulence at dissipative and inertial scales_ <br>
	[[http://link.aps.org/abstract/PRL/v98/e084502][Phys. Rev. Lett. *98*, 084502 (2007)]]

   *   J. Bec, M. Cencini and R. Hillenbrand<br>
       _Clustering of Heavy particles in random self-similar flows_  <br>
	[[http://link.aps.org/abstract/PRE/v75/e025301][Phys. Rev. E (Rapid Comm) *75* 025301 (2007).]]

   * 	J. Bec, M. Cencini and R. Hillenbrand <br>
        _Heavy particles in incompressible flows: the large Stokes number asymptotics_ <br>
	Physica D *226*, 11 (2007)

   *    M. Cencini, L. Palatella, S. Pigolotti, and A. Vulpiani<br>
         _Macroscopic equations for the adiabatic piston_ <br>
        [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000076000005051103000001&idtype=cvips&gifs=Yes][Phys. Rev. E *76*, 051103 (2007)]] 

   *   P. Visco, A. Puglisi, A. Barrat, E. Trizac and F. van Wijland<br>
        _Power injected in a granular gas_ <br>
         [[http://www.elsevier.fr/html/index.cfm?act=abstract&cle=86223][C. R. Physique 8, 641,  (2007)]]

   *   A. Puglisi, A. Baldassarri and A. Vulpiani<br>
       _Violation of the Einstein relation in Granular Fluids: the role of correlations_ <br>
        [[http://www.iop.org/EJ/abstract/-search=33508715.2/1742-5468/2007/08/P08016][J. Stat. Mech.  P08016  (2007)]]

   *   J. I. Alvarez-Hamelin and A. Puglisi<br>
        _The dynamical collision network in granular gases_ <br>
       [[http://link.aps.org/abstract/PRE/v75/e051302][Physical Review E  *75*, 051302 (2007)]]

   *   G. Costantini, A. Puglisi and U. M. B. Marconi <br>
        _A Granular Brownian Ratchet Model_  <br>
        [[http://link.aps.org/abstract/PRE/v75/e061124][Phys. Rev. E *75* 061124 (2007)]]

   *  G. Costantini, A. Puglisi and U. Marini Bettolo Marconi<br>
      _Velocity fluctuations in a one dimensional Inelastic Maxwell model_ <br>
       [[http://www.iop.org/EJ/abstract/-search=33508715.1/1742-5468/2007/08/P08031][J. Stat. Mech.   P08031  (2007)]]

   *   M. Cencini, D. Diacono and G. Gonnella  <br>
       _Hydrodynamics and growth laws in lamellar ordering_ <br>
        [[http://www.iop.org/EJ/abstract/0295-5075/79/2/26004][Europhys. Lett. *79* 26004 (2007)]]


   *   F. Cecconi, M. Cencini and A. Vulpiani  <br>
       _Transport properties in chaotic and non-chaotic many particle systems_ <br>
        [[http://www.iop.org/EJ/abstract/1742-5468/2007/12/P12001][J. Stat. Mech. P12001 (2007)]]

   *  A. Gabrielli and  F. Cecconi,<br>
       _Diffusion, super-diffusion and coalescence from single step_ <br>
        J. Stat. Mech. P10007 (2007).

   * F. Cecconi, F. Piazza and P. De-Los-Rios,<br>
      _Diffusion-limited unbinding of small peptides from PDZ domains_  <br>
      J. Phys. Chem. B *111*, 11057 (2007).

   * U. Marini-Bettolo-Marconi, F. Cecconi and P. Tarazona, <br>
     _Theory of thermostatted inhomogeneous granular fluids: A self-consistent density functional description_ <br>
      J. Chem. Phys. *126*, 164904 (2007).

   * F. Cecconi, G. Gonnella and G.P. Saracco, <br>
     _Kinetics of self-induced aggregation in Brownian particles_ <br>
     Phys. Rev. E *75*, 031111 (2007).


---+ 2006

   *   A Puglisi, L Rondoni and A Vulpiani<br>
        _Relevance of initial and final conditions for the fluctuation relation in Markov processes_ <br>
         [[http://www.iop.org/EJ/abstract/-search=15495608.1/1742-5468/2006/08/P08010][J. Stat. Mech. (2006) P08010]]

   * P. Visco,  A. Puglisi,  A. Barrat, E. Trizac and F. van Wijland <br>
     _Fluctuations of power injection in randomly driven granular gases_ <br>
      [[http://dx.doi.org/10.1007/s10955-006-9161-4][J. Stat. Phys. *125*, 533-568  (2006) ]]

   *  P. Visco, A. Puglisi, A. Barrat, F. van Wijland and  E. Trizac <br>
      _Energy fluctuations in vibrated and driven granular gases_ <br>
      [[http://www.edpsciences.org/articles/epjb/abs/2006/10/b05693/b05693.html][Europ. Phys. J. B *51*, 377-387 (2006).]]

   *  A. Puglisi, P. Visco, E. Trizac  and van Wijland<br>
      _Dynamics of a tracer granular particle as a nonequilibrium Markov process_ <br>
      [[http://link.aps.org/abstract/PRE/v73/e021301][Phys. Rev E  *73*, 021301 (2006).]]


   *   M. Cencini, A. Mazzino, S. Musacchio and A. Vulpiani <br>
     _Large-scale effects on meso-scale modeling for scalar transport_ <br>
    Physica D *220*, 146-156 (2006)

   *  S. Pigolotti,  MH. Jensen and A. Vulpiani <br>
      _Absorbing processes in richardson diffusion: Analytical results_ <br>
      Phys. Fluids *18*,  048104 (2006)

   * M. Chinappi, M. Cencini and A. Vulpiani <br>
     _Thin front propagation in random shear flows_ <br> 
     Phys. Rev. E *73*. 016308  (2006).

   * R. Centurelli, S. Musacchio, RA. Pasmanter and A. Vulpiani <br>
     _Resemblances and differences in mechanisms of noise-induced resonance_ <br>
      Physica A *360*,  261-273 (2006).

   * J. Bec, L. Biferale, G. Boffetta, A. Celani, M. Cencini, A. Lanotte, S. Musacchio, and F. Toschi <br>
     _Acceleration statistics of heavy particles in turbulence_ 
     J. Fluid Mech. *550*,  349-358 (2006)


   *   C.J.  Tessone,  M. Cencini and A. Torcini <br>
       _Synchronization of extended chaotic systems with long-range interactions: An analogy to Levy-flight spreading of epidemics_ <br> 
       Phys. Rev. Lett. *97*, 224101 (2006).
 
   *   J. Bec, L. Biferale,  G. Boffetta, M. Cencini, S. Musacchio and F. Toschi <br>
        _Lyapunov exponents of heavy particles in turbulence_  <br>
       Phys. Fluids *18*,  091702 (2006).

   *  J. Bec, L. Biferale, M. Cencini, A. Lanotte and F. Toschi <br>
      _Effects of vortex filaments on the velocity of tracers and heavy particles in turbulence_  <br>
      Phys. Fluids *18*,  081702 (2006).


   *   M. Cencini, J. Bec, L. Biferale, G. Boffetta, A. Celani, A. Lanotte, S. Musacchio, and F. Toschi <br>
       _Dynamics and statistics of heavy particles in turbulent flows_  <br>
       J. Turb. *7*, 1-16 (2006)

   *  J. Bec, L. Biferale, G. Boffetta, A. Celani, M. Cencini, A. Lanotte, S. Musacchio, and F. Toschi <br>
      _Acceleration statistics of heavy particles in turbulence_ <br>
      J. Fluid Mech. *550*,  349-358 (2006)
 
   *  M. Chinappi, M. Cencini and A. Vulpiani<br>
       _Thin front propagation in random shear flows_	<br>
	Phys. Rev. E *73*, 016308 (2006)
 
   *  G.  Costantini,  F. Cecconi,  U. Marini-Bettolo-Marconi <br>
       _Transport of a heated granular gas in a washboard potential_ <br>
       J.  Chem. Phys. *125*,   204711 (2006)

   *  F. Cecconi, C. Guardiani, R. Livi<br>
        _Testing simplified proteins models of the hPin1 WW domain_  <br>
        Biophys. J.  *91*  694-704 (2006). 

   *   U. Marini-Bettolo-Marconi, M. Natali, G. Costantini, F. Cecconi <br>
         _Inelastic Takahashi hard-rod gas_ <br>
        J.  Chem. Phys. *124*, 044507 (2006)

-----------------------------------

---+ 2005
    
   * M. Falcioni, L. Palatella and A. Vulpiani<br>
       _The production rate of the coarse grained Gibbs entropy and the Kolmogorov-Sinai entropy: a real connection ?_ <br>
       Phys. Rev. E *71*, 016118 (2005).

   * F. Cecconi, M. Cencini, M. Falcioni and A. Vulpiani <br>
        _Brownian motion and diffusion: From stochastic processes to chaos and beyond_ <br>
        Chaos *15*, 026102 (2005).
 
   * M. Falcioni, L. Palatella, S. Pigolotti and A. Vulpiani <br>
        _Properties making a chaotic system a good pseudo random number generator_ <br>
        Phys. Rev. E *72*, 016220 (2005).

  

   * 	S. Berti, G. Boffetta, M. Cencini and A. Vulpiani <br>
        _Turbulence and coarsening in active and passive binary mixtures_ <br>
	Phys. Rev. Lett. *95* 224501 (2005)

   * 	M. Cencini and A. Torcini <br>
        _Nonlinearly driven transverse synchronization in coupled chaotic systems_ <br>
	Physica D *208* , 191 (2005)

   *  J. Bec, A. Celani, M. Cencini and S. Musacchio<br>
      _Clustering and collisions of heavy particles in random smooth flows_ <br>
	[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PHFLE6000017000007073301000001&idtype=cvips&gifs=yes][Phys.  Fluids *17* , 073301 (2005)]]

-----------------------------------

---+ 2004

   * 	A. Celani, M.Cencini, A. Mazzino and M. Vergassola<BR>
	 _Active and passive fields face to face_ <BR>
         [[http://www.iop.org/EJ/article/1367-2630/6/1/072/njp4_1_072.html][New J. Phys. *6* , 72 (2004)]]
 
   * L. Biferale, M. Cencini, A. Lanotte, M. Sbragaglia and F. Toschi <BR>
        _Anomalous scaling and universality in hydrodynamic systems with power-law forcing_ <BR>
	[[http://www.iop.org/EJ/article/1367-2630/6/1/037/njp4_1_037.html][New J. Phys. *6* , 37 (2004)]]

   * 	A. Celani, M. Cencini and A. Noullez <BR>
        _Going forth and back in time: a fast and parsimonious algorithm for mixed initial/final-value problems_ <BR>
	Physica D *195* , 283 (2004)

   
-----------------------------------

---+ 2003

   * D. del-Castillo-Negrete, F. Cecconi, M. Falcioni and A. Vulpiani <br>
      _The origin of diffusion: the case of non chaotic systems_ <br>
     Physica D *180*, 129 (2003).

   * M. Falcioni, G. Mantica, S. Pigolotti and A. Vulpiani <br>
     _Coarse-grained probabilistic automata mimicking chaotic systems_ <br>
    Phys. Rev. Lett. *91*, 044101 (2003).

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Topic revision: r30 - 2009-12-28 - FabioCecconi